7th Training on Next Generation Sequencing and Analysis (Genome, RNASeq and MetaGenome)

Genomics Home

Jointly organized by:
The University of Trans-disciplinary Health Sciences & Technology (TDU)
Bengaluru Genomics Centre (BGC)

Program Directors

Training Theme

Rapid advancement of Next Generation Sequencing (NGS) Technologies has revolutionized the biological sciences. It has proven the better understanding of Genetics, functional genomics (genome, transcriptome, metagenome, etc.,) of an organisms. The emergence of NGS platforms imposes increasing demands on statistical methods and bioinformatics tools for the analysis and the management of the huge amounts of data generated by these technologies. This training is being jointly organized by TDU and BGC; it provides lectures, practical hands on session of NGS sequencing and sequence data analyses using bioinformatics tools.

Objectives

  • To train and capitalize the human resources for carrying out Next Generation Sequencing and Big- Data Analyses.
  • To pave the way into huge data-sets and tackle it through the bioinformatics skills.

Past Events

Please visit here for details on previously conducted events

Dates

24th September, 2018 to 29th September, 2018.

Target Audience

Students, faculty and scientists from an academic and industry including Life Sciences, Computer Science, Medicine, Agricultural Science, Environmental Science etc., are encouraged to participate in this event.

Recommended

This certificate course is Transdisciplinary in nature. TDU strongly recommends this module for UG/PG students and Research scholars.

Computer Support

We will be providing computers and server with required programs and software’s for the participants.

Schedule

Next Generation Genomic Technologies
Day 1
  • Introduction to Next Generation Sequencing (NGS) technologies
  • Guidelines for sample collection, storage and shipping
  • DNA extraction and visualization
Day 2
  • PCR amplification for NGS, visualization and assessment of PCR amplicons.
  • NGS library preparation and sequencing
Day 3
  • Basic of LINUX Command Line
  • Introduction to NGS Data File Formats, Metagenome sequence analysis – Reference, Mapping, Phylogenetic analysis and Population diversity analysis
Day 4
  • Whole genome sequence (WGS) analysis – Assembly and Annotation
  • Transcriptome sequence (RNASeq) analysis – Assembly and Annotation
Day 5
  • Transcriptome Quantification and Differential Gene Expression (DGE) analysis
  • Visit to NGS and Bioinformatics facility
Day 6
  • Sequence Read Archive (SRA) submission to NCBI
  • Genome Browser and Databases
  • Talk on Intellectual Property Rights (IPR) and manuscript writing

Speakers

Malali Gowda

Malali Gowda TDU

Title of the talk: Function of Genomes and Biosphere
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Arun Kumar KP

Arun Kumar KP Southwest University, China

Title of the talk: Genomics in post genomics era
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R Srivatsan

R Srivatsan Institute of Bioinformatics and Applied Biotechnology

Title of the talk: Applications of R and statistics in Next Generation Genomic Technologies
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Dr. Keshava Prasad

Dr. Keshava Prasad Yenepoya University

Talk Title: Proteogenomics
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Dr. Satish Rao

Dr. Satish Rao CCRE, TDU

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Workshop Documents

Brochure

Organizing Secretary

  • Ms. Ashalatha K L, TDU.
  • Mr. Santosh Hegde, BGC.

© 2018 TDU, Bengaluru.